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    "message": "fix CI: migrate Dockerfile from devtools::install_github to pak::pak\n\ndevtools::install_github() was deprecated in devtools 2.5.0 and now\nrequires the remotes package, which is missing from the base image.\n\nCo-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>\n",
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