{
  "_id": "6a4dd99cd253724d3f6dd2fd",
  "Package": "Vicus",
  "Type": "Package",
  "Title": "Exploiting Local Structures to Improve Network-Based Analysis of\nBiological Data",
  "Version": "0.99.0",
  "Authors@R": "c(person(\"Koki\", \"Tsuyuzaki\", role = c(\"aut\", \"cre\"),\nemail = \"k.t.the-answer@hotmail.co.jp\"))",
  "Description": "Compared with the similar graph embedding method such as\nLaplacian Eigenmaps, 'Vicus' can exploit more local structures\nof graph data. For the details of the methods, see the\nreference section of 'GitHub' README.md\n<https://github.com/rikenbit/Vicus>.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/rikenbit/Vicus",
  "VignetteBuilder": "knitr",
  "Repository": "https://rikenbit.r-universe.dev",
  "Date/Publication": "2023-03-24 09:57:19 UTC",
  "RemoteUrl": "https://github.com/rikenbit/vicus",
  "RemoteRef": "HEAD",
  "RemoteSha": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-08 04:58:17 UTC",
    "User": "root"
  },
  "Author": "Koki Tsuyuzaki [aut, cre]",
  "Maintainer": "Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>",
  "_user": "rikenbit",
  "_type": "src",
  "_file": "Vicus_0.99.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/ff97cd3af468852c095d49e4139e3d3395126147fbb8b866844bed6f4124b6dd",
  "_filesize": 377824,
  "_sha256": "ff97cd3af468852c095d49e4139e3d3395126147fbb8b866844bed6f4124b6dd",
  "_expires": "2026-10-16T05:01:15.000Z",
  "_created": "2026-07-08T04:58:17.000Z",
  "_published": "2026-07-08T05:01:16.721Z",
  "_jobs": [
    {
      "job": 85790758795,
      "time": 144,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8158594334"
    },
    {
      "job": 85790758809,
      "time": 140,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8158593208"
    },
    {
      "job": 85790758798,
      "time": 84,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8158580986"
    },
    {
      "job": 85790758791,
      "time": 117,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8158587817"
    },
    {
      "job": 85790469468,
      "time": 157,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8158563455"
    },
    {
      "job": 85790758767,
      "time": 100,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8158584292"
    },
    {
      "job": 85790758778,
      "time": 88,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8158581837"
    },
    {
      "job": 85790758781,
      "time": 112,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8158586760"
    },
    {
      "job": 85790758797,
      "time": 80,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8158580400"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798",
  "_status": "success",
  "_upstream": "https://github.com/rikenbit/vicus",
  "_commit": {
    "id": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
    "author": "koki <k.t.the-answer@hotmail.co.jp>",
    "committer": "koki <k.t.the-answer@hotmail.co.jp>",
    "message": "CONTRIBUTING.md\n",
    "time": 1679651839
  },
  "_maintainer": {
    "name": "Koki Tsuyuzaki",
    "email": "k.t.the-answer@hotmail.co.jp",
    "login": "kokitsuyuzaki",
    "description": "",
    "uuid": 2173745
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "RANN",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "RSpectra",
      "role": "Imports"
    },
    {
      "package": "scatterplot3d",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "rikenbit",
  "_selfowned": true,
  "_usedby": 5,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "kokitsuyuzaki",
      "count": 5,
      "uuid": 2173745
    }
  ],
  "_userbio": {
    "uuid": 7158513,
    "type": "organization",
    "name": "RIKEN BiT",
    "followers": 16,
    "description": "Omics AI Research Team, Advanced General Intelligence in Science Program (AGIS), TRIP, RIKEN (ex-Laboratory for Bioinformatics Research, RIKEN)"
  },
  "_downloads": {
    "count": 426,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Vicus"
  },
  "_devurl": "https://github.com/rikenbit/vicus",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/Vicus.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rikenbit/vicus",
  "_realowner": "rikenbit",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.99.0",
      "date": "2023-03-23"
    }
  ],
  "_exports": [
    "embedding",
    "graphMatrix"
  ],
  "_help": [
    {
      "page": "Vicus-package",
      "title": "Exploiting Local Structures to Improve Network-Based Analysis of Biological Data",
      "topics": [
        "Vicus-package"
      ]
    },
    {
      "page": "embedding",
      "title": "Graph Embedding",
      "topics": [
        "embedding"
      ]
    },
    {
      "page": "graphMatrix",
      "title": "Graph Laplacian type matrix",
      "topics": [
        "graphMatrix"
      ]
    }
  ],
  "_readme": "https://github.com/rikenbit/vicus/raw/HEAD/README.md",
  "_rundeps": [
    "lattice",
    "Matrix",
    "RANN",
    "Rcpp",
    "RcppEigen",
    "RSpectra"
  ],
  "_vignettes": [
    {
      "source": "Vicus.Rmd",
      "filename": "Vicus.html",
      "title": "Vicus: Exploiting local structures to improve network-based analysis of biological data",
      "author": "Koki Tsuyuzaki",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "2D Embedding",
        "3D Embedding",
        "Session Information",
        "References"
      ],
      "created": "2023-03-23 08:29:21",
      "modified": "2023-03-23 10:24:41",
      "commits": 2
    }
  ],
  "_score": 5.176091259055681,
  "_indexed": true,
  "_nocasepkg": "vicus",
  "_universes": [
    "rikenbit",
    "kokitsuyuzaki"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-07-08T05:00:27.000Z",
      "distro": "resolute",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/5044191398faa6f4e70ca7934c4bf2c2e862705b8a36d6ab95a93b926a733386",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-07-08T05:00:23.000Z",
      "distro": "resolute",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/90b86b917743bb57c0ddc8e5510aed7b9ee8b0110cbfe71d12806e0c1ef8b82e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-07-08T04:59:40.000Z",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/6c12879db4bee24ee62a081361cd6b2a4a8574c5b7fc403e8d9cfd701053f4cc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-07-08T05:00:07.000Z",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/9b79e7b7710f8e2514dafe3c391c549911d5ca4ff03ae7f35cba4cfff3c5712e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.0",
      "date": "2026-07-08T05:00:13.000Z",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/cd7a206efb5c6359989520b37252de6897d8b07c76a9e583a838e9905b3ea3d6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-07-08T04:59:28.000Z",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/4a203a9b62ed5807553c32336bac7082a3ee74892b008ddd696474b789f26d1a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-07-08T04:59:57.000Z",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/da3a26c9a1c81686d26dc9959f1ebc14c4f4765e97e80e19b6d60a4e0149f051",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-07-08T04:59:20.000Z",
      "commit": "4be58d784ddf32d526fe4dd2bac40dda53d64efa",
      "fileid": "https://r2.ropensci.org/dc042ddb4892b134f6e6ec2fadbdc315554ba323a7af0ccd20b6386a8221d6ce",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/rikenbit/actions/runs/28918534798"
    }
  ]
}