Package: WormTensor
Type: Package
Title: A Clustering Method for Time-Series Whole-Brain Activity Data of
        'C. elegans'
Version: 0.1.2
Authors@R: c(person("Kentaro", "Yamamoto", role = c("aut", "cre"),
                      email = "yamaken37.the.answer@gmail.com"),
                      person("Koki", "Tsuyuzaki", role = "aut"),
                      person("Itoshi", "Nikaido", role = "aut"))
Maintainer: Kentaro Yamamoto <yamaken37.the.answer@gmail.com>
Description: A toolkit to detect clusters from distance matrices. The
        distance matrices are assumed to be calculated between the
        cells of multiple animals ('Caenorhabditis elegans') from input
        time-series matrices. Some functions for generating distance
        matrices, performing clustering, evaluating the clustering, and
        visualizing the results of clustering and evaluation are
        available. We're also providing the download function to
        retrieve the calculated distance matrices from 'figshare'
        <https://figshare.com>.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/rikenbit/WormTensor
BugReports: https://github.com/rikenbit/WormTensor/issues
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
Depends: R (>= 4.1.0)
Imports: rTensor, usedist, dtwclust, clusterSim, clValid, aricode,
        cluster, ggplot2, Rtsne, uwot, factoextra, ggrepel, cowplot,
        methods
RoxygenNote: 7.2.0
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: https://rikenbit.r-universe.dev
Date/Publication: 2025-07-21 16:25:58 UTC
RemoteUrl: https://github.com/rikenbit/wormtensor
RemoteRef: HEAD
RemoteSha: 6cf63a315d3fe51e9aac83fc95e4b6b27b040791
NeedsCompilation: no
Packaged: 2026-06-06 09:00:22 UTC; root
Author: Kentaro Yamamoto [aut, cre],
  Koki Tsuyuzaki [aut],
  Itoshi Nikaido [aut]