Package: WormTensor 0.1.1

Kentaro Yamamoto

WormTensor: A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans'

A toolkit to detect clusters from distance matrices. The distance matrices are assumed to be calculated between the cells of multiple animals ('Caenorhabditis elegans') from input time-series matrices. Some functions for generating distance matrices, performing clustering, evaluating the clustering, and visualizing the results of clustering and evaluation are available. We're also providing the download function to retrieve the calculated distance matrices from 'figshare' <https://figshare.com>.

Authors:Kentaro Yamamoto [aut, cre], Koki Tsuyuzaki [aut], Itoshi Nikaido [aut]

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NEWS

# Install 'WormTensor' in R:
install.packages('WormTensor', repos = c('https://rikenbit.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rikenbit/wormtensor/issues

On CRAN:

Conda:

4.18 score 1 stars 3 scripts 118 downloads 7 exports 152 dependencies

Last updated 8 months agofrom:9905417bc6. Checks:8 OK, 1 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 27 2025
R-4.5-winOKMar 27 2025
R-4.5-macOKMar 27 2025
R-4.5-linuxOKMar 27 2025
R-4.4-winOKMar 27 2025
R-4.4-macOKMar 27 2025
R-4.4-linuxOKMar 27 2025
R-4.3-winERRORMar 27 2025
R-4.3-macOKMar 27 2025

Exports:as_worm_tensorworm_clusteringworm_distanceworm_downloadworm_evaluateworm_membershipworm_visualize

Dependencies:abindade4aricodebackportsbase64encBHbootbroombslibcachemcarcarDataclasscliclueclusterclusterSimclValidcodetoolscolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkdendextendDerivdigestdoBydplyrdqrngDTdtwdtwcluste1071ellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustflexclustFNNfontawesomeforeachFormulafsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvirlbaisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmodeltoolsmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpixmappkgconfigplyrpolynompromisesproxypurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppParallelRcppProgressRcppThreadRdpackreformulasreshape2rlangrmarkdownRSpectrarstatixrTensorRtsnesassscalesscatterplot3dshinyshinyjssitmosourcetoolsspSparseMstringistringrsurvivaltibbletidyrtidyselecttinytexusedistutf8uwotvctrsviridisviridisLitewithrxfunxtableyaml

Clustering and visualization of time-series whole-brain activity data of C. elegans using WormTensor

Kentaro Yamamoto, Koki Tsuyuzaki, Itoshi Nikaido

Rendered fromWormTensor.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2022-08-25
Started: 2022-08-03