Package: WormTensor 0.1.1

Kentaro Yamamoto

WormTensor: A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans'

A toolkit to detect clusters from distance matrices. The distance matrices are assumed to be calculated between the cells of multiple animals ('Caenorhabditis elegans') from input time-series matrices. Some functions for generating distance matrices, performing clustering, evaluating the clustering, and visualizing the results of clustering and evaluation are available. We're also providing the download function to retrieve the calculated distance matrices from 'figshare' <https://figshare.com>.

Authors:Kentaro Yamamoto [aut, cre], Koki Tsuyuzaki [aut], Itoshi Nikaido [aut]

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Peer review:

Bug tracker:https://github.com/rikenbit/wormtensor/issues

On CRAN:

7 exports 1.02 score 148 dependencies 3 scripts 252 downloads

Last updated 2 months agofrom:9905417bc6. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

Exports:as_worm_tensorworm_clusteringworm_distanceworm_downloadworm_evaluateworm_membershipworm_visualize

Dependencies:abindade4aricodebackportsbase64encBHbootbroombslibcachemcarcarDataclasscliclueclusterclusterSimclValidcodetoolscolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkdendextendDerivdigestdoBydplyrdqrngDTdtwdtwcluste1071ellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustflexclustFNNfontawesomeforeachfsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvirlbaisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmodeltoolsmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpixmappkgconfigplyrpolynompromisesproxypurrrquantregR6rappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppParallelRcppProgressRcppThreadreshape2rlangrmarkdownRSpectrarstatixrTensorRtsnesassscalesscatterplot3dshinyshinyjssitmosourcetoolsspSparseMstringistringrsurvivaltibbletidyrtidyselecttinytexusedistutf8uwotvctrsviridisviridisLitewithrxfunxtableyaml